TraitTrainR: accelerating large-scale simulation under models of continuous trait evolution
2024

TraitTrainR: A Tool for Simulating Trait Evolution

Sample size: 104 publication 10 minutes Evidence: moderate

Author Information

Author(s): Roa Lozano Jenniffer, Duncan Mataya, McKenna Duane D, Castoe Todd A, DeGiorgio Michael, Adams Richard

Primary Institution: University of Arkansas

Hypothesis

How accurately do current models capture evolutionary processes in nature?

Conclusion

TraitTrainR is a flexible R package that facilitates large-scale simulations of continuous trait evolution, demonstrating its utility in model selection and evolutionary inference.

Supporting Evidence

  • TraitTrainR allows for multi-trait simulations and incorporates measurement error.
  • The package includes 44 models and supports various evolutionary scenarios.
  • Model selection accuracy was evaluated using AIC across different phylogenetic case studies.

Takeaway

TraitTrainR helps scientists simulate how traits evolve over time, making it easier to study and understand evolution.

Methodology

The study developed TraitTrainR in R 4.4.0, allowing for flexible simulations of trait evolution with various models and parameters.

Potential Biases

Potential biases may arise from measurement errors and the assumptions of the models used.

Limitations

The study's findings are based on specific case studies and parameter values, which may not generalize to all datasets.

Digital Object Identifier (DOI)

10.1093/bioadv/vbae196

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