ClustAll: An R package for patient stratification in complex diseases
2024

ClustAll: A Tool for Patient Stratification in Complex Diseases

Sample size: 659 publication 10 minutes Evidence: high

Author Information

Author(s): Ortega-Legarreta Asier, Palomino-Echeverria Sara, Huergo Estefania, Lagani Vincenzo, Kiani Narsis A., Rautou Pierre-Emmanuel, Picola Nuria Planell, Tegner Jesper, Gomez-Cabrero David

Primary Institution: Navarrabiomed—Fundación Miguel Servet, Universidad Publica de Navarra

Hypothesis

Can ClustAll effectively stratify patients with complex diseases using clinical data?

Conclusion

ClustAll is a powerful tool for patient stratification that improves personalized medicine strategies.

Supporting Evidence

  • ClustAll was validated using two public clinical datasets.
  • It effectively handles missing values and mixed data types.
  • ClustAll achieved high sensitivity and specificity in patient stratification.
  • The tool allows for the identification of multiple stratifications within the same population.
  • ClustAll incorporates parallel computing for enhanced efficiency.
  • The package includes user-friendly tools for exploring stratifications.
  • ClustAll's performance was benchmarked against standard clustering algorithms.
  • Results showed ClustAll outperformed traditional methods in accuracy.

Takeaway

ClustAll helps doctors group patients based on their health data, making it easier to give them the right treatment.

Methodology

ClustAll uses a clustering framework to analyze clinical data, handling mixed data types and missing values.

Potential Biases

Potential biases may arise from the imputation of missing data.

Limitations

The study may not account for all complexities in clinical data and relies on the quality of input data.

Participant Demographics

The study included 659 patients with breast cancer and 918 patients with heart disease.

Statistical Information

P-Value

0.001

Statistical Significance

p<0.05

Digital Object Identifier (DOI)

10.1371/journal.pcbi.1012656

Want to read the original?

Access the complete publication on the publisher's website

View Original Publication