How the gene ontology evolves
2011

How the Gene Ontology Evolves

publication Evidence: moderate

Author Information

Author(s): Leonelli Sabina, Diehl Alexander D, Christie Karen R, Harris Midori A, Lomax Jane

Primary Institution: ESRC Centre for Genomics in Society, University of Exeter

Conclusion

The study highlights the challenges of applying general standards to the development of a specific ontology and emphasizes the need for trained curators to manage ontology shifts effectively.

Supporting Evidence

  • The Gene Ontology has evolved since its creation in 1999 to better represent biological knowledge.
  • Ontology shifts occur for various reasons, including the emergence of anomalies and the need to expand the scope of GO.
  • Curators play a crucial role in updating the ontology to reflect new scientific developments.

Takeaway

This study shows how the Gene Ontology, which helps scientists understand biological terms, changes over time to keep up with new discoveries and correct mistakes.

Methodology

Qualitative analysis of specific examples of ontology shifts discussed by curators.

Limitations

The selection of examples is dependent on the specific expertise and interests of the authors, and a quantitative study is needed to determine the frequency of each type of ontology shift.

Digital Object Identifier (DOI)

10.1186/1471-2105-12-325

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