An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed, with an example from human genome epidemiology
2007

Open Source System for Managing Biomedical Literature

Sample size: 26 publication Evidence: moderate

Author Information

Author(s): Yu Wei, Yesupriya Ajay, Wulf Anja, Qu Junfeng, Khoury Muin J, Gwinn Marta

Primary Institution: National Office of Public Health Genomics, Centers for Disease Control and Prevention

Hypothesis

Can an open source infrastructure improve the management and querying of domain-specific biomedical literature?

Conclusion

The open source system infrastructure provides a novel approach to managing and querying information from domain-specific PubMed data.

Supporting Evidence

  • The system achieved a recall rate of 90% and precision of 93%.
  • Usability tests showed that most participants found the system easy to use and learn.

Takeaway

This study created a new tool to help people find and manage research articles about specific health topics more easily.

Methodology

The study involved developing a web-based infrastructure for managing PubMed literature and conducting usability tests with participants.

Limitations

The study's findings may not be generalizable beyond the specific biomedical domain addressed.

Participant Demographics

Participants included epidemiologists, geneticists, web developers, and graduate students.

Digital Object Identifier (DOI)

10.1186/1471-2105-8-436

Want to read the original?

Access the complete publication on the publisher's website

View Original Publication