Phylogenetic and molecular characterization of equine H3N8 influenza viruses from Greece (2003 and 2007): Evidence for reassortment between evolutionary lineages
2011

Characterization of Equine H3N8 Influenza Viruses in Greece

Sample size: 30 publication Evidence: moderate

Author Information

Author(s): Bountouri Maria, Fragkiadaki Eirini, Ntafis Vasileios, Kanellos Theo, Xylouri Eftychia

Primary Institution: Agricultural University of Athens, Greece

Hypothesis

The study aims to isolate and characterize equine influenza virus strains from outbreaks in Greece during 2003 and 2007.

Conclusion

The Greek strains of equine influenza represent an example of 'frozen evolution' and likely reassortment between different viral strains.

Supporting Evidence

  • Equine influenza virus was isolated from 16 out of 30 nasal swabs.
  • The Greek isolates were classified as members of the Eurasian lineage.
  • Phylogenetic analysis indicated reassortment between different viral strains.

Takeaway

Researchers found a virus that makes horses sick in Greece, and it looks like it has mixed genes from different viruses.

Methodology

Nasal swabs from affected horses were tested for equine influenza virus using MDCK cell culture, RT-PCR, and sequencing.

Potential Biases

There may be risks of bias due to the limited sample size and the specific geographic focus.

Limitations

The study only includes data from two outbreaks and does not account for potential laboratory contamination.

Participant Demographics

Affected horses were unvaccinated and aged between 6 months to 2 years.

Digital Object Identifier (DOI)

10.1186/1743-422X-8-350

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