Maize inbreds show allelic variation for diel transcription patterns
2024
Maize Inbreds and Their Gene Expression Patterns
Sample size: 24
publication
Evidence: moderate
Author Information
Author(s): Gage Joseph L., Romay M. Cinta, Buckler Edward S.
Primary Institution: Cold Spring Harbor Laboratory
Hypothesis
How does allelic variation affect diel transcription patterns in maize inbreds?
Conclusion
The study found significant natural variation in diel transcription patterns among maize inbred lines, influenced by regulatory sequence variation.
Supporting Evidence
- The study observed extensive natural variation in diel transcription patterns among maize inbred lines.
- There was two-fold variation in the number of genes that oscillate over the course of the day.
- A convolutional neural network identified sequences associated with known circadian clock genes.
Takeaway
This study looked at how different types of maize plants express their genes throughout the day, and found that they do so in very different ways.
Methodology
Evaluated diel transcript abundance for 24 diverse maize inbred lines using a convolutional neural network.
Digital Object Identifier (DOI)
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