Functional biosynthetic stereodivergence in a gene cluster via a dihydrosydnone N-oxide
2024

Biosynthesis of Valdiazen and Fragin in Burkholderia cenocepacia

publication 10 minutes Evidence: high

Author Information

Author(s): Ren Jiajun, Mathew Anugraha, Rodríguez-García María, Kohler Tobias, Blacque Olivier, Linden Anthony, Eberl Leo, Sieber Simon, Gademann Karl

Primary Institution: University of Zurich

Hypothesis

The ham gene cluster in Burkholderia cenocepacia H111 produces both enantiomerically pure (R)-fragin and racemic valdiazen from a common biosynthetic pathway involving dihydrosydnone N-oxide.

Conclusion

The study reveals a novel mechanism of stereodivergence in the biosynthesis of valdiazen and fragin, highlighting the role of dihydrosydnone N-oxide as a key intermediate.

Supporting Evidence

  • The ham gene cluster produces both (R)-fragin and racemic valdiazen.
  • Dihydrosydnone N-oxide is identified as a crucial intermediate in the biosynthetic pathway.
  • Both non-enzymatic racemization and enzyme-mediated dynamic kinetic resolution are involved in the process.
  • Feeding experiments confirmed the production of (R)-fragin from the dihydrosydnone N-oxide intermediate.

Takeaway

This research shows how a single gene cluster in bacteria can create two different types of molecules that are important for communication, using a special intermediate.

Methodology

The study utilized gene knockout, stable isotope feeding experiments, and mass spectrometry to investigate the biosynthetic pathway.

Digital Object Identifier (DOI)

10.1038/s42004-024-01372-3

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