The PRIDE Database at 20 Years: 2025 Update
Author Information
Author(s): Yasset Perez-Riverol, Chakradhar Bandla, Deepti J Kundu, Selvakumar Kamatchinathan, Jingwen Bai, Suresh Hewapathirana, Nithu Sara John, Ananth Prakash, Mathias Walzer, Shengbo Wang, Juan Antonio Vizcaíno
Primary Institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
Conclusion
The PRIDE database has significantly improved its infrastructure and tools for data submission and access, enhancing the usability and integration of proteomics data.
Supporting Evidence
- The PRIDE database is the largest data repository for proteomics data worldwide.
- PRIDE supports the FAIR data principles, enhancing data findability and reusability.
- Improvements in data submission processes have reduced the average time to finish data submissions to just 4 minutes.
- PRIDE Archive stored 42,036 datasets as of August 2024, showing significant growth in data submissions.
- 69% of the datasets in PRIDE Archive are public, reflecting efforts to increase data accessibility.
Takeaway
The PRIDE database helps scientists share and access proteomics data more easily, making it better for research and collaboration.
Methodology
The manuscript summarizes developments in PRIDE resources and tools over the last three years, including improvements in data submission processes and infrastructure.
Digital Object Identifier (DOI)
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