Re-searcher: a system for recurrent detection of homologous protein sequences
2008
Re-searcher: A Tool for Finding Similar Protein Sequences
publication
Evidence: moderate
Author Information
Author(s): Valdemaras Repšys, Mindaugas Margelevičius, Česlovas Venclovas
Primary Institution: Institute of Biotechnology, Vilnius University
Hypothesis
Re-searcher aims to provide a highly configurable environment for recurrent sequence searches to detect new homologs in protein databases.
Conclusion
Re-searcher allows for automatic periodic detection of both close and distant homologs with a user-friendly interface.
Supporting Evidence
- Re-searcher is designed to handle multiple queries and provide results for each user.
- The system can perform combined searches using profiles generated from previous searches.
- It supports both local and remote database searches, enhancing flexibility.
Takeaway
Re-searcher is a computer program that helps scientists find similar proteins by checking databases regularly and telling them when new ones are found.
Methodology
Re-searcher uses PSI-BLAST for sequence searches and can be configured for local or remote database searches.
Digital Object Identifier (DOI)
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