Multiple molecular dynamics simulation of the isoforms of human translation elongation factor 1A reveals reversible fluctuations between 'open' and 'closed' conformations and suggests specific for eEF1A1 affinity for Ca2+-calmodulin
2008

Molecular Dynamics of Human Translation Elongation Factor 1A Isoforms

publication Evidence: moderate

Author Information

Author(s): Kanibolotsky Dmitry S, Novosyl'na Oleksandra V, Abbott Catherine M, Negrutskii Boris S, El'skaya Anna V

Primary Institution: Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine

Hypothesis

The functional differences between the isoforms eEF1A1 and eEF1A2 may be due to changes in their dynamics.

Conclusion

The study found that eEF1A1 has a higher affinity for calmodulin compared to eEF1A2, which may be linked to their different dynamic properties.

Supporting Evidence

  • eEF1A1 shows increased flexibility and a closer average distance between its domains compared to eEF1A2.
  • The transition between 'open' and 'closed' conformations of eEF1A is reversible.
  • eEF1A1 has a less flexible calmodulin-binding region, suggesting higher affinity for calmodulin.

Takeaway

Scientists studied two similar proteins and found that one can stick to a helper protein better than the other, which might be important for understanding cancer.

Methodology

The study used multiple molecular dynamics simulations to analyze the dynamic behavior of the eEF1A isoforms.

Digital Object Identifier (DOI)

10.1186/1472-6807-8-4

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