Protein disorder prediction at multiple levels of sensitivity and specificity
2008

Improving Protein Disorder Prediction with DISpro

Sample size: 2408 publication Evidence: moderate

Author Information

Author(s): Hecker Joshua, Yang Jack Y, Cheng Jianlin

Primary Institution: University of Central Florida

Hypothesis

Can the DISpro tool be enhanced to allow users to adjust sensitivity and specificity thresholds for protein disorder predictions?

Conclusion

The evaluation and extension of DISpro make it a more valuable and useful tool for structural and functional genomics.

Supporting Evidence

  • DISpro was benchmarked against seven other disorder predictors.
  • The study created a large dataset from the Protein Data Bank.
  • DISpro allows users to set different thresholds for sensitivity and specificity.

Takeaway

This study improved a tool called DISpro that helps scientists find parts of proteins that don't have a fixed shape, making it easier to study how proteins work.

Methodology

The study created a large dataset of protein sequences and benchmarked the DISpro tool against other predictors by varying decision thresholds.

Limitations

The dataset may differ slightly from the official dataset used in CASP7 evaluations.

Digital Object Identifier (DOI)

10.1186/1471-2164-9-S1-S9

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