CompaGB: A Framework for Comparing Genome Browsers
Author Information
Author(s): Thomas Lacroix, Valentin Loux, Annie Gendrault, Jean-François Gibrat, Hélène Chiapello
Primary Institution: INRA UR1077, Unité Mathématique, Informatique & Génome, Jouy-en-Josas, France
Hypothesis
Can a community-based framework improve the evaluation and comparison of genome browsers?
Conclusion
The CompaGB framework helps users choose the best genome browser for their needs and allows for comparative evaluations.
Supporting Evidence
- The framework allows users to visualize features of genome browsers in accessible formats.
- It incorporates 60 specific criteria for genome browsers and 65 from the QSOS method.
- The evaluations were performed by multiple evaluators to ensure a range of perspectives.
Takeaway
This study created a tool to help scientists pick the best software for looking at genes, making it easier to compare different options.
Methodology
The study developed a web application and criteria for evaluating genome browsers based on the QSOS method.
Potential Biases
Evaluations are influenced by the background and perception of the evaluators.
Limitations
The evaluations may reflect the biases of the evaluators and the methodology can be time-consuming.
Digital Object Identifier (DOI)
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