Genomic Regions Identified by Overlapping Clusters of Nominally-Positive SNPs from Genome-Wide Studies of Alcohol and Illegal Substance Dependence
2011

Identifying Genetic Regions Linked to Alcohol and Substance Dependence

Sample size: 3172 publication 10 minutes Evidence: high

Author Information

Author(s): Johnson Catherine, Drgon Tomas, Walther Donna, Uhl George R.

Primary Institution: Molecular Neurobiology Branch, National Institutes of Health, Intramural Research Program, National Institutes on Drug Abuse, Baltimore, Maryland, United States of America

Hypothesis

Can we identify chromosomal regions associated with alcohol and illegal substance dependence using a non-template strategy?

Conclusion

The study successfully identified several chromosomal regions associated with alcohol and substance dependence, providing high confidence in rejecting the null hypothesis that these associations are due to chance.

Supporting Evidence

  • The study identified 204 chromosomal regions with significant SNP clusters in European-American samples.
  • Monte Carlo simulations showed a very high confidence level that the identified regions were not due to chance.
  • Similar results were found in African-American samples, with 129 chromosomal regions identified.

Takeaway

Researchers looked for specific parts of our DNA that might make people more likely to become addicted to alcohol or drugs, and they found some important clues.

Methodology

The study used genome-wide association studies (GWAS) to analyze SNPs in individuals with alcohol and substance dependence compared to controls, focusing on clusters of nominally-significant SNPs.

Potential Biases

There may be biases related to the recruitment of participants, as some were treatment-seeking while others were not.

Limitations

The study's findings may be limited by the sample's racial/ethnic homogeneity and the potential for false negatives due to the polygenic nature of addiction.

Participant Demographics

The study included 1171 European-American and 652 African-American individuals with alcohol dependence, and 1395 European-American and 499 African-American controls.

Statistical Information

P-Value

p<0.0001

Statistical Significance

p<0.05

Digital Object Identifier (DOI)

10.1371/journal.pone.0019210

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