Urea assimilation and oxidation support activity of phylogenetically diverse microbial communities of the dark ocean
2024

Urea's Role in Deep Sea Microbial Communities

Sample size: 29 publication 10 minutes Evidence: high

Author Information

Author(s): Nestor Arandia-Gorostidi, Alexander L Jaffe, Alma E Parada, Bennett J Kapili, Karen L Casciotti, Rebecca S R Salcedo, ChloƩ M J Baumas, Anne E Dekas

Primary Institution: Stanford University

Hypothesis

Urea is an important source of nitrogen and energy for microorganisms in the deep sea.

Conclusion

Urea is widely utilized by diverse microorganisms in the dark ocean, contributing significantly to deep-sea nitrification and supporting chemoautotrophy.

Supporting Evidence

  • 25% of deep-sea cells assimilated urea-derived nitrogen.
  • Cell-specific nitrogen incorporation rates from urea were higher than from ammonium.
  • Urea concentrations and assimilation rates generally increased below the euphotic zone.
  • UreC gene was found within 39% of deep-sea cells in the studied region.
  • Urea-based nitrification was detected at all depths at one of the two sites analyzed.

Takeaway

Microbes in the deep ocean eat urea, which helps them grow and produce energy, just like how plants use sunlight.

Methodology

The study used metagenomics, nitrification rates, and single-cell stable-isotope-uptake measurements to assess urea utilization in the deep sea.

Limitations

Direct measurements of urea assimilation in the mesopelagic and bathypelagic zones were previously lacking.

Statistical Information

P-Value

p<0.05

Statistical Significance

p<0.05

Digital Object Identifier (DOI)

10.1093/ismejo/wrae230

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