PhyloFinder: A Search Engine for Phylogenetic Trees
Author Information
Author(s): Chen Duhong, Burleigh J Gordon, Bansal Mukul S, Fernández-Baca David
Primary Institution: Iowa State University
Hypothesis
PhyloFinder aims to enhance the accessibility and utility of phylogenetic data by providing advanced search capabilities.
Conclusion
PhyloFinder improves the ability to search phylogenetic databases by allowing users to perform both taxonomic and phylogenetic queries effectively.
Supporting Evidence
- PhyloFinder can identify trees containing exact or synonymous taxon names.
- It provides spelling suggestions for taxonomic queries.
- PhyloFinder enhances the ability to find trees with ancestors or descendants of a query taxon.
- The system can visualize query results and provide links to external databases.
Takeaway
PhyloFinder is like a smart search tool that helps scientists find and compare trees of different species easily, even if they don't know the exact names.
Methodology
PhyloFinder uses an inverted index and the NCBI taxonomy to enhance search capabilities for phylogenetic trees.
Limitations
PhyloFinder relies on the accuracy of the underlying databases and may not include the most recent taxonomic updates.
Digital Object Identifier (DOI)
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