EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
2008

EMAAS: A User-Friendly Tool for Microarray Data Analysis

Sample size: 32 publication Evidence: moderate

Author Information

Author(s): Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJE, Butcher SA

Primary Institution: Imperial College London

Hypothesis

The aim was to develop a distributed e-support system for microarray data analysis and management.

Conclusion

EMAAS enables users to track and perform microarray data management and analysis tasks through a single easy-to-use web application.

Supporting Evidence

  • EMAAS has been successfully tested with 32 demonstration users concurrently logged into the system.
  • The system architecture is flexible and scalable to allow new array types, analysis algorithms and tools to be added with relative ease.
  • EMAAS integrates R and Bioconductor, which are powerful tools for microarray data analysis.

Takeaway

EMAAS is a tool that helps scientists analyze large amounts of data from experiments easily, without needing to install complicated software.

Methodology

EMAAS is a web-based application that integrates various tools for microarray data analysis, allowing users to perform tasks through a single interface.

Limitations

The analysis functionality is currently limited to standard Affymetrix data analysis workflows.

Digital Object Identifier (DOI)

10.1186/1471-2105-9-493

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