Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information
2007

Finding Patterns in Gene Regulation

publication

Author Information

Author(s): Arvind Rao, Hero Alfred O III, States David J, Engel James Douglas

Primary Institution: University of Michigan

Hypothesis

The discovery of these motifs would enable the large-scale investigation for the tissue-specific regulatory role of any conserved sequence element identified from genome-wide studies.

Conclusion

The study presents a method for identifying tissue-specific regulatory motifs that can help in understanding gene expression.

Supporting Evidence

  • Motif discovery is crucial for understanding gene expression.
  • The proposed method can identify novel motifs with potential regulatory functions.
  • Identifying tissue-specific motifs can aid in studying development and disease.

Takeaway

This study helps scientists find special patterns in DNA that control how genes work in different types of cells.

Methodology

The study uses directed information for classification constrained motif discovery and a support vector machine classifier to identify tissue specificity.

Digital Object Identifier (DOI)

10.1155/2007/13853

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