EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity
Author Information
Author(s): Nahum Laila A, Reynolds Matthew T, Wang Zhengyuan O, Faith Jeremiah J, Jonna Rahul, Jiang Zhi J, Meyer Thomas J, Pollock David D
Primary Institution: Louisiana State University
Hypothesis
The central aim of EGenBio is to provide integrated analysis and visualization of raw sequence data, alignments, and phylogenetic trees.
Conclusion
EGenBio was designed to serve as a platform for tools and resources to ease combined analysis in evolution, genomics, and biodiversity.
Supporting Evidence
- EGenBio integrates curated sequence alignments and phylogenetic trees.
- The system is designed to be robust to change and easily extensible.
- EGenBio provides tools for analyzing individual sequences or sequence alignments.
Takeaway
EGenBio is a tool that helps scientists manage and analyze a lot of genetic data to understand how different species are related.
Methodology
EGenBio utilizes MySQL-relational databases and dynamic page generation, integrating curated sequence alignments and phylogenetic trees.
Limitations
Replication of the EGenBio system requires specific software and a Linux-based operating system.
Digital Object Identifier (DOI)
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