Identifying pre-post chemotherapy differences in gene expression in breast tumours: a statistical method appropriate for this aim
2002

Gene Expression Changes in Breast Tumors After Chemotherapy

Sample size: 20 publication Evidence: moderate

Author Information

Author(s): E L Korn, L M McShane, J F Troendle, A Rosenwald, R Simon

Primary Institution: National Cancer Institute

Hypothesis

Can we identify genes that are expressed differently in breast tumors before and after chemotherapy?

Conclusion

The study identified 17 genes that are more expressed after chemotherapy than before, which were not reported in the original analysis.

Supporting Evidence

  • The study found 17 genes that were more expressed after chemotherapy.
  • Cluster analysis was shown to be inappropriate for this type of analysis.
  • The statistical method used controlled for multiple comparisons.

Takeaway

Researchers looked at breast cancer samples before and after treatment and found some genes that changed a lot after chemotherapy.

Methodology

The study used a paired t-test with a step-down permutation approach to analyze gene expression data from paired tumor specimens.

Potential Biases

The study does not mention specific risks of bias.

Limitations

The quality of the data on the website may affect the ability to detect interesting findings.

Participant Demographics

The study involved 20 individuals with breast tumors who underwent chemotherapy.

Statistical Information

P-Value

p<0.05

Statistical Significance

p<0.05

Digital Object Identifier (DOI)

10.1038/sj.bjc.6600216

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